Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs1755401 chr10:27405763 A/C 6.89E-5 509 16.73 20.5 24.07 KM Plot
LGG rs17557864 chr5:168974601 T/C 1.46E-8 509 22.37 23.63 6.83 KM Plot
LGG rs17557919 chr5:168978545 C/T 1.46E-8 509 22.12 23.85 6.83 KM Plot
LGG rs17557940 chr5:168982483 C/T 1.51E-8 508 21.85 24.07 6.83 KM Plot
LGG rs17557989 chr5:168989657 T/C 1.65E-8 506 22.37 23.85 6.83 KM Plot
LGG rs17558003 chr5:168990239 C/T 1.52E-8 508 22.37 23.85 6.83 KM Plot
LGG rs17558310 chr5:169010795 C/T 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs17558380 chr5:169016649 G/A 1.59E-8 506 22.47 23.63 6.83 KM Plot
LGG rs17558436 chr5:169020848 C/T 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs17558484 chr5:169021702 A/G 1.65E-8 506 21.87 23.85 6.83 KM Plot
LGG rs17558610 chr5:169027495 C/T 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs17598589 chr8:6184017 G/A 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs17598706 chr8:6184083 A/G 2.44E-5 496 21.83 24.03 7.72 KM Plot
LGG rs17644097 chr5:168977167 T/C 1.46E-8 509 22.12 23.85 6.83 KM Plot
LGG rs17644331 chr5:168999636 T/G 1.52E-8 508 22.37 23.85 6.83 KM Plot